Sr. Scientist, Electrochemical and Microarray DNA Synthesis

Company Overview

Atlas Data Storage is pioneering the future of information technology by harnessing the unique properties of synthetic DNA for next-generation data storage solutions. We are seeking a highly skilled and motivated Sr. Scientist to join our R&D team focused on advancing our massively parallel, semiconductor-based DNA synthesis platform. This scientist will play a central role in developing and optimizing integrated electrochemical DNA synthesis workflows, contributing to both chemistry innovation and product development. The ideal candidate will bring deep technical expertise, hands-on experience, and a collaborative spirit to help drive scientific and strategic goals in a fast-paced, interdisciplinary environment.

Essential Duties and Responsibilities

• Major contributor to the development and optimization of CMOS chip-based DNA synthesis workflows, including both phosphoramidite and enzymatic chemistries
• Develop and optimize electrochemical synthesis protocols, including chip handling, hardware configuration and software integration, and process troubleshooting
• Investigate and refine surface functionalization strategies to improve synthesis efficiency and fidelity
• Collaborate with engineering and synthesis teams to build and iterate prototype testbeds, integrating chemistry, fluidics, and hardware systems
• Operate NGS-based analytical pipelines for quality assessment of oligonucleotide pools
• Analyze experimental data using molecular biology and organic chemistry techniques
• Drive technology transfer from R&D to manufacturing, ensuring robust scale-up and process documentation
• Help define and execute scientific and technical objectives aligned with company goals
• Present experimental plans, results, conclusions, and next steps at group meetings, project team meetings, and company-wide meetings.
• Maintain detailed and meticulous records of all experimental work and analysis.

Qualifications

• Qualified candidates will have an advanced degree (PhD) in Chemistry, Organic Chemistry, Chemical Engineering, or a closely related field.
• Experienced MS or BS candidates with significant relevant experience will also be considered.
• Experience in a biotech or pharma R&D environment is highly desirable.
• Proven track record and proficiency in phosphoramidite oligonucleotide synthesis chemistry and platform development
• Experience in oligonucleotide microarray or pool synthesis is highly desirable
• Strong understanding of DNA chip technologies and synthetic biology applications
• Hands-on experience with NGS workflows and data analysis is highly desirable
• Familiarity with software scripting for synthesis automation
• Demonstrated ability to participate cross-functional projects and collaborate across R&D and manufacturing teams
• Excellent problem-solving, communication, and project management skills

Physical Demands & Work Environment

• Work will be performed onsite in office and laboratory space located in South San Francisco.
• Mobility: Must be able to move about the laboratory and office environment regularly. This includes standing and walking for extended periods, often up to 6–8 hours per day.
• Manual Dexterity: Must have fine motor skills and steady hands to handle delicate instruments, operate laboratory equipment, pipette accurately, and perform repetitive benchwork with precision.
• Lifting/Carrying: Must be able to lift and carry up to 40 pounds occasionally, such as boxes of lab supplies or equipment.
• Visual Acuity: Must have sufficient visual acuity to read small print on labels, instrument displays, and computer monitors. Close vision, color vision, and the ability to adjust focus are required.
• Environmental Conditions: Frequently exposed to typical laboratory conditions, including biological samples, chemicals, and reagents. Must be able to wear appropriate personal protective equipment (PPE) such as lab coats, gloves, and safety goggles as required.